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Showing 8 results for Dna

Banafshe Safaie Farahani , Reza Mostowfizadeh-Ghalamfarsa,
Volume 2, Issue 1 (3-2013)
Abstract

DNA microarrays technology is a method for studying the gene expression in large scale, based on investigations of probes and targets hybridization. This technology can also be used for identification of different organisms. DNA microarrays are a set of probes linked to a solid phase as microscopic spots. After hybridization of targets to probes, hybridization level is calculated by means of different methods such as measuring refulgence of fluorescent dyes to determine gene expression level. A microarray examination has different steps: making DNA chips, preparing targets, performing hybridization, and gathering and analyzing data. DNA microarrays technology can be used in different fields of plant pathology such as identification of different species of fungi, bacteria, nematodes and viruses, and to study plant-pathogen interaction.
Zohreh Davoodi, Jahangir Heydarnejad, Hossein Masoomi,
Volume 8, Issue 2 (9-2019)
Abstract

Davoodi Z, Heidarnejad J and Masoumi H (2019) Next generation sequencing technique and its application in plant virology. Plant Pathology Science 8(2):77-85. DOI:10.2982/PPS.8.2.77

DNA sequencing is used by virtually all branches of biological research. Among the first advanced sequencing technologies, scientists were able to elucidate genetic information from any particular biological system using the Sanger sequencing method. Although Sanger sequencing generates high quality sequencing data, its limitations such as scalability, speed and resolution often preclude scientists from obtaining the essential information. To overcome these barriers, next generation sequencing technique (NGS) was introduced at the beginning of the 21st century. This technique provided a highly efficient, rapid, and low cost DNA sequencing platform beyond the reach of the standard and traditional DNA sequencing technologies that developed in late 1970s. In 2009, NGS technologies began to be applied to several areas of plant virology including virus/viroid genome sequencing, discovery and detection, ecology, epidemiology and replication. It is expected that NGS plays very significant roles in many plant virology researches.
 


Saeid Tabein, Seyed Ali Akbar Behjatnia,
Volume 8, Issue 2 (9-2019)
Abstract

Tabein S and Behjatnia SAA (2019) Intracellular interactions of geminiviruses in host plants. Plant Pathology Science 8(2):86-101. DOI:10.2982/PPS.8.2.86
 
Geminiviruses (Geminiviridae family) with small circular ssDNA genome are encoding just four to seven proteins on virion and complementary-sense strands of their genomes. To have a progressive infection, they are dependent mostly on host cellular machineries and interact with wide range of different host plants factors and processes. Geminiviruses alter the cell cycle in infected plants and they can support replication of viral DNA. They change host gene expression patterns, inhibit cell death pathways, alter macromolecule trafficking and interfere with protein modification to redirect or suppress host defenses and hormones signaling. Geminiviruses encode gene silencing suppressors to interfere with post-transcriptional gene silencing and alter plant DNA methylation and microRNA (miRNA) pathways, often causing developmental abnormalities. Here, the geminiviruses are discussed as one of the most destructive plant viruses and their proteins interactions with host cell factors and pathways are described.

Kayvan Farri, Maryam Khezri,
Volume 10, Issue 2 (9-2021)
Abstract

Farri K, Khezri M (2021) Integrate management method of plants crown gall disease. Plant Pathology Science 10(2):116-127.  
   Doi: 10.2982/PPS.10.2.116.

 
Agrobacterium tumefaciens is capable of causing distractive disease of crown gall in a wide range of dicotyledonous plants and causes great economic impact in its hosts. This soil-dwelling bacterium can survive as a saprophyte in soil and plant debris for a long time. When the host plant is present, the bacterium is absorbed into the plant through the root secretions from the wounds and enters the plant through it. The pathogenic bacteria introduce a part of its Ti plasmid, called T-DNA, into the plant cell. Integration of the T-DNA to plant cell genome results in expression of the encoded oncogenes and an increasing the production of phytohormones in cells. Overproduction of auxin and cytokinin leads to cells hyperplasia and hypertrophy, which results in the gall formation on the root, crown, and branches of infected plants. As regards the wide host range, high economic impact, and difficult control of this disease, in this article phenotypic, genetic and pathogenicity characteristics of bacteria have been studied, as well as biology and effective strategies of integrated disease management are presented.

Fariba Ghaderi, Seyed Ali Asghar Hashemi,
Volume 11, Issue 2 (9-2022)
Abstract

Ghaderi F, Hasehemi SAA (2022) Phytophthora citricola as the causal agent of persimmon root rot in Fars province of Iran. Plant Pathology Science 11(2): 1-10.  
 
Introduction: Phytophthora species are a serious threat to plant products worldwide. Therefore, identifying them is the first step in finding a way to treat the disease. The aim of this study was to identify Phytophthora species causing root and crown rot of persimmon trees in Fars province. Materials and methods: Samples were taken from the crowns and roots of diseased persimmon trees, in the summer of 2018-2019. Infected root and crown tissues were cultured in CMA-PARPH medium. Isolates of Phytophthora species were purified by single spore method and morphological and molecular characteristics were used to identify them. Results: Six isolates were obtained from the roots of diseased persimmon trees and identified as Phytophthora citricola based on their morphological characteristics. Phylogenetic studies based on beta-tubulin (βtub) and 28S rDNA genes showed that all isolates (Iran-Pc1 to Iran-Pc6) were grouped into clade 2 with a validation scale of 100 and confirmed the identification of P .citricola. Conclusion: This is a new report of persimmon root and crown rot caused by Phytophthora citricola in Fars Province.
Keywords: Beta-tubulin, Gene, Persimmon, Phytophthora, 28S rDNA
 

Fariba Ghaderi, Hojatollah Mohammadi,
Volume 12, Issue 2 (9-2023)
Abstract

Ghaderi F, Mohammadi H (2023) Occurrence of jujube brown spot disease in Iran. Plant Pathology Science 12(2):95-104. 
Jujube tree has a natural distribution in tropical and sub-tropical regions of Asia. Symptoms of brown-to-black spots on leaves, and fruits, and twigs blight were observed in the hills of the suburbs of Nurabad County, Fars Province, Iran, in 2022. This research was conducted to identify the cause of this disease based on morphological and genetic characteristics. The diseased leaves and branches of the neighboring trees in this area were sampled. The pathogen was isolated and purified after surface disinfection of disease tissues on potato/dextrose/agar medium. Its morphological characteristics were studied and the fungus Nothophoma quercina was identified. Phylogenetic analysis base on the comparison of beta-tubulin (tub2), and ITS-rDNA genes sequences, with related fungi in NCBI Gen Bank, confirmed the of N. quercina species. Its pathogenicity was proved on the side cut jujube branches based on Koch's postulates in vitro. This is the first report of brown spot and twigs blight of the jujube trees caused by N. quercina in Iran.

Zahra Mirzaeipour, Eidi Bazgir, Doustmorad Zafari, Mostafa Darvishnia,
Volume 12, Issue 2 (9-2023)
Abstract

Mirzaeipour Z, Bazgir E, Zafari D, Darvishnia M (2023) Effect of temperature and culture medium on the growth and sporulation of eight Trichoderma species. Plant Pathology Science 12(2):105-116. DOI: https://doi.org/10.2982/PPS.12.2.105

Trichoderma species are important agents of biological control of soil-borne plant pathogens. The growth and reproduction of these fungi are influenced by the culture medium and temperature. This study was conducted to determine the effect of temperature and culture medium on the growth and sporulation of Trichoderma species. Ten isolates of Trichoderma species were isolated from agricultural soils of different regions of Lorestan Province, Iran. The study of morphological characteristics and sequencing of ITS-rDNA, and tef1α gene regions showed that they are belong to eight species of Trichoderma. Investigating the effect of four types of culture medium and five temperatures to determine optimum culture medium and temperature for the growth and reproduction of these fungi, showed that the Potato/Dextrose/Agar (PDA) medium is the best, and the temperature of 20 to 30 degrees Celsius is optimal for the growth and reproduction of these fungi. Evaluation of their ability to inhibit the growth of the soil-borne plant pathogenic fungus Rhizoctonia solani in vitro, showed that T. harzianum LT8 has the most inhibition ability. Therefore, this isolate can be used as a potential biocontrol agent for this plant pathogenic fungus in future research.
 

Masoumeh Delaramifar, Mahdi Pirnia, Mojtaba Keykhasaber, Shirahmad Sarani, Hamideh Khajeh,
Volume 12, Issue 2 (9-2023)
Abstract

 Delaramifar M,  Pirnia M,  Keykhasaber M, Sarani SA,  Khajeh H (2023) Reaction of eight luffa genotypes to damping-off disease. Plant Pathology Science 12(2):76-85. 
Introduction: Damping-off caused by Pythium aphanidermatum is one of the major diseases of luffa. Identifying and planting of resistant varieties is an environmentally friendly solution for integrated disease management. This study was conducted to determine the reaction of eight native and non-native luffa genotypes to the disease. Materials and Methods: The pathogen (Pythium aphanidermatum IRAN597C) was obtained from the collection of fungi of the Iranian Institute of Plant Protection Researches. It was inoculated into seedlings of eight luffa genotypes. After the appearance of yellowing symptoms and seedling death, the disease index (DI) and the area under the disease progression curve (AUDPC) were calculated for each genotype. Koch's postulates were carried out to prove pathogenicity and the pathogen was isolated from diseased seedlings. Then, for molecular confirmation of the pathogen, ITS-rDNA sequencing was used. Results: The sequencing of the ITS-rDNA region of the pathogen showed a phylogenetic affinity of 99% with other isolates of P. aphanidermatum. According to the DI, the northern large and the long luffa genotypes were grouped as sensitive genotypes, and other genotypes including northern black seed, northern white seed, toori, Afghani, grooved and Brazilian were grouped as resistant genotypes. Based on the AUDPC, the northern black seed, and northern white seed genotypes showed the lowest level, toori, grooved, Afghani and Brazilian genotypes showed the medium level, and northern large and long luffa genotypes showed the highest AUDPC level. Conclusion: Considering the low values of the DI and AUDPC in the northern black seed and northern white seed genotypes, planting these two genotypes is suggested for management of the disease in luffa.


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