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Showing 6 results for Regression Model

Seyyed Mahdi Javadzadeh, Parviz Rezvani Moghaddam, Mohammad Banayan-Aval, Javad Asili,
Volume 3, Issue 2 (2-2017)
Abstract

Roselle is an important medicinal and industrial plant of the family of Malvaceae, and is planted in vast areas of Sistan and Baluchestan. In a laboratory study, the effect of varying temperatures on seed germination of Hibiscus sabdariffa was investigated and minimum, optimum and maximum temperatures for its germination were determined in a completely randomized design with four replications.  For this purpose, temperatures 5, 10, 15, 20, 25, 30, 35, 40, 45 and 50°C were considered in each treatment. Cardinal temperatures for germination were determined consistent with three models (i.e., Intersected-lines Model, Five-Parameters Beta Model and Quadratic Polynomial Model). The traits measured were germination percentage, the speed of germination and mean germination time. The temperature effect on all the measured traits was significant. The results of the regression analysis showed that the best model in terms of cardinal point of this plant is the Five-Parameters Beta Model. Given the results of this model, the minimum and the optimal temperatures for the germination of Roselle are 4.04°C, and 29.83° C, respectively.
 


Farnaz Porali, Farshid Ghaderi-Far, Elias Soltani, Mohammad Hadi Palevani,
Volume 5, Issue 2 (3-2019)
Abstract



Extended abstract
Introduction: Germination speed is one of the most important germination indices, used in most studies to compare the effects of different treatments on seed germination. Researchers use the reverse time up to 50% maximum germination (1/D50) to calculate the germination rate. One of the methods used for calculating the D50 is the utilization of nonlinear regression models such as Logestic, Gompertz, Richard, Weibull and Hill. In addition, for the purpose of calculating this parameter, simple empirical models such as the model presented by Farooq et al. and Ellis and Roberts are used. The question which arises is which of these methods has more precision predicting D50. The purpose of this study was to calculate D50, using different methods in seed germination of cotton.
Material and Methods: In this experiment, cottonseeds were placed at three temperatures of 15, 25 and 40°C with three replications, and germinated seeds were counted daily several times. To calculate D50, several nonlinear regression models including Gompertze, Logestic, Hill (the four-parameter), Richard and Weibull models were used. Moreover, for the purpose of calculating D50, the models presented by Farooq et al. and Ellis and Roberts were used.
Results: The results showed that all nonlinear regression models exhibited suitable fit to germination data. However, logestic, Hill and Weibull showed better predictability of D50, compared with other models. Besides, D50 calculated by the Farooq model was similar to that estimated by nonlinear regression models, whereas D50 estimated by the Ellis and Roberts model was higher than that estimated by other models.
Conclusions: The results of this study showed that both non-linear regression models and the model developed by Farooq could be used to calculate D50 of cottonseed. In general, the results of this study showed that nonlinear regression models could be used to calculate D50. In this research, Logestic, Hill, and Weibull showed good fit for cumulative seed germination data of cotton seeds versus time at different temperatures. These models have coefficients that have a biological concept that includes maximum germination percentage, time to 50% maximum germination and time to start germination. Moreover, when researchers only seek to measure D50 and are not familiar with the statistical software, they can use the empirical formula presented in this research.
 
Highlights:
  1. Calculating D50 in cottonseeds, using different methods.
  2. Using nonlinear regression models to calculate D50 in cottonseeds.
  3. Developing a proper method which is more accurate, and better lends itself to calculating D50 of cottonseeds.

Sepideh Nikoumaram, Naeimeh Bayatian, Omid Ansari,
Volume 6, Issue 2 (3-2020)
Abstract



Extended abstract
Introduction: Temperature is one of the primary environmental regulators of seed germination. Seed priming technique has been known as a challenge to improving germination and seedling emergence under different environmental stresses. Quantification of germination response to temperature and priming is possible, using non-liner regression models. Therefore, the objective of this study was to evaluate the effect of temperature and priming on germination and determination of cardinal temperatures (base, optimum and maximum) of Brassica napus L.
Material and Methods: Treatments included priming levels (non-priming, priming with water, gibberellin 50 and 100 mg/l) and temperature (5, 10, 15, 20, 30, 35 and 40 °C). Germination percentage and time to 50% maximum seed germination of Brassica napus L. were calculated for different temperatures and priming by fitting 3-parameter logistic functions to cumulative germination data. For the purpose of quantifying the response of germination rate to temperature, use was made of 3 nonlinear regression models (segmented, dent-like and beta). The root mean square of errors (RMSE), coefficient of determination (R2), CV and SE for the relationship between the observed and the predicted germination percentage were used to compare the models and select the superior model from among the methods employed.
Results: The results indicated that temperature and priming were effective in both germination percentage and germination rate. In addition, the results showed that germination percentage and rate increase with increasing temperature to the optimum level and using priming. As for the comparison of the 3 models, according to the root mean square of errors (RMSE) of germination time, the coefficient of determination (R2), CV and SE, the best model for the determination of cardinal temperatures of Brassica napus L. for non-primed seeds was the segmented model. For hydro-priming and hormone-priming with 50 mg/l GA, the best models were segmented and dent-like models and for hormone-priming with 100 mg/l GA,  the dent-like model was the best. The results showed that for non-priming, hydropriming with water, gibberellin 50 and 100 mg/l treatments, the segmented model estimated base temperature as 3.54, 2.57, 2.34 and 2.34 °C and dent-model estimated base temperature as 3.34, 2.45, 2.21 and 2.83 °C, respectively. The segmented model estimated optimum temperature as 24.62, 23.23, 23.69 and 24.38 °C. The dent-model estimated lower limit of optimum temperature and upper limit of optimum temperature as 20.01, 19.62, 16.25, 19.87 and 28.81, 27.38, 29.58 and 27.31 °C.
Conclusion: Utilizing non-liner models (segmented, dent-like and beta) for quantification of germination of Brassica napus L. response to different temperatures and priming produced desirable results. Therefore, utilizing the output of these models at different temperatures can be useful in the prediction of germination rate in different treatments.
 
 
Highlights:
1-The effect of priming on germination of Brassica napuswas investigated.
2-The temperature range of rapeseed germination of Brassica napus changes with the use of seed priming.

Majid Azimmohseni, Farshid Ghaderi-Far, Mahnaz Khalafi, Hamid Reza Sadeghipour, Marzieh Ghezel,
Volume 9, Issue 1 (9-2022)
Abstract


Extended abstract
  Introduction: Numerous studies are being carried out to reveal the effects of different treatments on the germination of seeds from various plants. The most commonly used method of analysis is the nonlinear regression which estimates germination parameters. Although the nonlinear regression has been performed based on different models, some serious problems in its structure and results motivated researchers to investigate alternative approaches with higher accuracy and precision. The main purpose of the present research is to introduce the alternative parametric time to event model and comparing its reliability to the nonlinear regression in experiments carried out under different conditions.
  Materials and Methods:  The results of four different experiments were used here including the effect of Potassium cyanide on walnut seed germination, the effect of salinity on wheat seed germination, the effect of water potential on corn seed germination and the effect of temperature on cotton seed germination. The nonlinear regression and time to event methods were applied based on the Gompertz model. The obtained standard errors from the two models were further assessed using the Monte-Carlo method.
  Results: Both methods provided well-fitting models according to the MSE and R2   criteria. Although the germination parameters were approximately identical in both models, the standard error of parameters in nonlinear regression was significantly less than those of time to event method except for the experiments in which all tested seeds germinated within the time frame of study so that in the latter case the estimated standard errors in both models were identical. The Monte-Carlo method confirmed the results of the time to event model and reveals the underestimation of the nonlinear regression method in estimating the standard error of parameters.
  Conclusions: Generally, the results of this research showed that the time to event model can be trustfully utilized in seed germination studies under different conditions and treatments. This model, not only provides precise estimates of the germination parameters but also provides the precise standard error of parameters that have important roles in making inferences for parameters. The drc package in R software enables researchers to fit the different time to event models.

 
Highlights:
  1. Using the time to the event model in estimation of seed germination parameters.
  2. Comparing the time to event and nonlinear regression methods in different seed germination experiments.
  3. Using the Monte-Carlo method for investigating the accuracy of results of the used methods.
 
 
 
 
 
 
Fatemeh Ghorbannezhad, Mohsen Zavareh, Farzad Sharifzadeh,
Volume 10, Issue 1 (9-2023)
Abstract

Extended abstract
Introduction: Linseed (Linum usitatissimum L.) is a multipurpose crop and is cultivated to obtain oil, fiber, and seeds. Under optimal moisture conditions, the temperature is considered an environmental factor affecting the germination of this crop. Hence, knowing the cardinal temperatures can help farmers to predict the successful germination, emergence, and even yield of linseed and help scientists to develop new cultivars that are more tolerant to high temperatures. Therefore, this study was performed to determine the temperature range and the cardinal temperatures of germination in two linseed genotypes.
Material and methods: The germination response of two linseed genotypes (Golchin genotype and Line 286) to nine temperatures (3, 5, 10, 15, 20, 25, 30, 35, and 40 Celsius degrees) was quantified in a CRD based split-plot experiment with four replications. For this purpose, three nonlinear regression models (beta, segmented, and dent-like) were used to fit to the data and select the superior model. The superior model was selected using the Akaike information index (AIC), the modified Akaike index (AICc), and ∆i.
Results: Findings showed that the beta model had the best performance in estimating the line 286 cardinal temperatures according to its lower AIC (-3.96), AICc (-89.61), and ∆i (0). Accordingly, the base, optimum, and maximum temperature as well as the number of biological hours estimated by this model for Line 286 were 7.18, 24.22, 40.16 Celsius degrees, and 19.25 hours, respectively. In the Golchin genotype, the beta model with the lowest AIC=-3.89 and AICc= -89.083 fitted better compared with the other models. Nonetheless, considering ∆i for beta which was respectively 0, 1.61, and 4.49 for beta, segmented, and dent-like models, Beta and segmented models had a similar accuracy in estimation of cardinal temperatures for Golchin genotype. These findings represent that the suitable temperature range for germination of the Golchin genotype is 3.8- 23.85 Celsius degrees and the range of biological hours to 50% of germination varied from 16.42 to 19.77 hours.
Conclusion: Overall, according to the results of this study, it is possible to predict the time to germination under optimal moisture conditions using the beta model for Line 286 and one of the two beta and segmented models for the Golchin genotype.

Highlights:
1. A suitable model was developed for a suitable prediction of the seed germination percentage of two linseed genotypes (Golchin genotype and Line 286).
2. The cardinal temperatures for two linseed genotypes (Golchin genotype and Line 286) were determined.

Mahboubeh Shahbazi, Jafar Asghari, Behnam Kamkar, Edris Taghvaie Salimi,
Volume 10, Issue 2 (3-2023)
Abstract

Extended abstract
Introduction: The germination process is one of the most critical stages of a plant's growth and determines the success of the emergence of a weed in an agroecosystem because it is the first stage in which the weed competes for a niche. Various environmental factors, including temperature and moisture, affect the germination of weed seeds. Modeling techniques are capable of predicting germination, seedling emergence, and establishment of weed species. The ability to predict weed germination in response to environmental conditions is very effective for the development of control programs. The experiment was conducted to determine the cardinal temperature and evaluate the best model for quantifying the response of the germination rate of Western ragweed weed seeds under different water stress conditions.
Materials and Methods: A factorial experiment was conducted in the form of a completely randomized design in three replications. The investigated factors include temperature with eight levels (5, 10, 15, 20, 25, 30, 35, and 40 C˚) and water potential with six levels (0, -0.3, -0.6, -0.9, -1.2, and -1.5 MPa) on the germination of Western ragweed. In order to quantify the response of Western ragweed germination rate to temperature, three non-linear Dent-like, Beta, and Segmented regression models were used.
Results: The results showed that the effect of temperature, water potential, and their interactions on maximum germination, germination rate, and time required to reach 10, 50, and 90 percent germination were significant. Also, the results showed that by increasing the temperature from 10 to 25 C˚, the percentage and rate of germination increased whereas by increasing water potential, the percentage and rate of germination decreased. In comparing the models, based on RMSE, R2, CV, and coefficients a and b parameters, the Beta model was the most suitable for estimating the temperatures of cardinal Western ragweed. The base, optimum, and ceiling temperatures using the Beta model were 3.88, 25, and 40 C˚, respectively.
Conclusions: The use of the Beta model to quantify the germination response of Western ragweed seeds to different levels of water potential at different temperatures had acceptable results. Therefore, by using the output of these models at different temperatures, it is possible to predict the germination rate at different potentials.

Highlights:
1- Germination cardinal temperatures and the effect of water potential on western ragweed weed were investigated.
2- Estimation of different models to quantify the response of germination rate to temperature and different water potentials.


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